neuralmind

Installation Guide

This guide covers all installation methods for NeuralMind, including system requirements, dependencies, and platform-specific instructions.

NeuralMind is a local, offline Python package — no SaaS, no accounts, no outbound calls. Once installed, it works from the CLI, via its MCP server, and (for Claude Code) as a PostToolUse compression layer. See the Setup Guide for post-install configuration or Use Cases to pick a workflow first.

Install — pick your path (new in v0.7.0)
System Requirements
Quick Install
Installation Methods
- From PyPI
- pipx
- uv
- Docker
- From Source
- Development Installation
Dependencies
Platform-Specific Instructions
Verification
Troubleshooting

Install — pick your path

New in v0.7.0. NeuralMind installs five ways. All paths deliver the same package — the neuralmind CLI, the neuralmind-mcp server, and the Python module.

Method	Command	When to pick
pip	`pip install neuralmind`	Default. Drops it in your active env.
pipx	`pipx install neuralmind`	Global CLI, no env pollution.
uv	`uv pip install neuralmind`	Modern, fast Python tooling.
Docker	`docker pull ghcr.io/dfrostar/neuralmind:latest && docker run --rm -v "$PWD:/project:ro" ghcr.io/dfrostar/neuralmind:latest neuralmind --help`	Containerized — no Python on the host. Multi-platform (`linux/amd64` + `linux/arm64`); auto-published to GHCR on every release since v0.9.0.
From source	`git clone https://github.com/dfrostar/neuralmind && pip install -e .`	Hacking on NeuralMind itself.

Verify any install:

neuralmind --help     # works for every path

# For pip / uv / source (a Python env where neuralmind is importable):
python -c "import neuralmind; print(neuralmind.__version__)"

Full walkthrough with pros and cons of each path: Install paths.

The sections below remain the deep reference — system requirements, dependency tables, platform-specific notes, and troubleshooting.

System Requirements

Minimum Requirements

Component	Requirement
Python	3.10 or higher
Memory	2GB RAM (4GB+ recommended for large codebases)
Storage	500MB for base install + space for embeddings
OS	Linux, macOS, Windows 10+

Software Prerequisites

Python 3.10+: Download from python.org
pip (or pipx / uv): Usually included with Python
git (optional): For source installation
graphify (optional): since v0.15.0 NeuralMind generates the code graph itself with a built-in tree-sitter backend (Python, TypeScript, Go). Install graphify (pip install graphifyy) only if you want its richer graph — it takes priority automatically when present.

Quick Install

For most users, the quickest path:

# Install NeuralMind (includes the built-in tree-sitter graph backend)
pip install neuralmind

# Verify installation
neuralmind --help

Prefer one of the other four install paths? See the install matrix above.

Installation Methods

From PyPI

The default installation method.

Default Installation

pip install neuralmind

This includes everything most users need: the CLI, the semantic indexing layer, and the MCP server (neuralmind-mcp) for Claude Desktop, Claude Code, Cursor, Cline, Continue, Hermes-Agent, OpenClaw, and any other MCP-compatible client.

Note for users upgrading from v0.4.x or earlier: the MCP server used to be gated behind an [mcp] extra. From v0.5.0 onward it ships in the base package. Existing pip install "neuralmind[mcp]" commands still work — the mcp extra is preserved as an empty no-op for backwards compatibility.

With Development Tools

For contributors or those who want testing/linting tools:

pip install neuralmind[dev]

Full Installation

All extras (equivalent to [dev] since v0.5.0):

pip install neuralmind[all]

pipx

pipx installs each Python application in its own dedicated venv and exposes the entry points on your PATH globally. neuralmind and neuralmind-mcp are then available from any directory without activating anything.

pipx install neuralmind

# Optional — only if you want the graphify backend:
pipx inject neuralmind graphifyy

Trade-off: because pipx isolates the package, import neuralmind from your project’s own Python won’t work. If you also script against the Python API, use pip in a project venv instead.

uv

uv is Astral’s Rust-based Python package manager — significantly faster installs, drop-in for pip, compatible venvs.

uv pip install neuralmind

For a uv-managed project:

uv add neuralmind

Docker

Pull from GHCR (auto-published since v0.9.0, multi-platform linux/amd64 + linux/arm64):

docker pull ghcr.io/dfrostar/neuralmind:latest
# or pin a specific version
docker pull ghcr.io/dfrostar/neuralmind:v0.9.0

# Run the MCP server. `neuralmind-mcp` ignores any CLI args; each MCP
# tool call (neuralmind_wakeup, neuralmind_query, …) carries its own
# `project_path` argument that the client passes in. The mount below
# just exposes the project tree so those tool calls can find the path.
docker run --rm -i \
  -v "$PWD:/project:ro" \
  ghcr.io/dfrostar/neuralmind:latest neuralmind-mcp

# Run the graph view on http://localhost:8765
docker run --rm -p 8765:8765 \
  -v "$PWD:/project:ro" \
  ghcr.io/dfrostar/neuralmind:latest \
  neuralmind serve /project --host 0.0.0.0 --no-auth

Local build — if you want to build the image yourself from the repo’s Dockerfile: docker build -t neuralmind:dev . then substitute neuralmind:dev for ghcr.io/dfrostar/neuralmind:latest in the commands above.

To persist the index between runs, mount the project directory read-write so .neuralmind/ and graphify-out/ land on the host:

docker run --rm -v "$PWD:/project" ghcr.io/dfrostar/neuralmind:latest neuralmind build /project

From Source

For the latest development version or contributors:

# Clone the repository
git clone https://github.com/dfrostar/neuralmind.git
cd neuralmind

# Install in editable mode
pip install -e .

# Or with dev tools
pip install -e ".[dev]"

Development Installation

Recommended setup for contributors:

# Clone and enter directory
git clone https://github.com/dfrostar/neuralmind.git
cd neuralmind

# Create virtual environment
python -m venv venv
source venv/bin/activate  # Linux/macOS
# or: venv\Scripts\activate  # Windows

# Install with dev dependencies
pip install -e ".[dev]"

# Install pre-commit hooks (optional)
pre-commit install

Dependencies

Core Dependencies (Automatically Installed)

Package	Version	Purpose
chromadb	≥0.4.0	Vector database for embeddings
pyyaml	≥6.0	Configuration file parsing
toml	≥0.10	TOML configuration file support
mcp	≥1.23.0	Model Context Protocol server (since v0.5.0)

Optional Dependencies

Dev Extra (`pip install neuralmind[dev]`)

Package	Version	Purpose
pytest	≥7.0	Testing framework
pytest-asyncio	≥0.21.0	Async test support
black	≥23.0	Code formatting
ruff	≥0.1.0	Fast linting

Legacy `[mcp]` extra

pip install "neuralmind[mcp]" still resolves cleanly — the extra is preserved as an empty no-op so existing install commands in user docs, blog posts, and CI configs keep working. No reason to use it in new commands; pip install neuralmind already includes the MCP server.

External Tools

Tool	Installation	Purpose
graphify (optional)	`pip install graphifyy`	Richer knowledge graph — auto-prioritized over the built-in tree-sitter backend when present

Platform-Specific Instructions

Linux (Ubuntu/Debian)

# Ensure Python 3.10+ is installed
sudo apt update
sudo apt install python3.10 python3.10-venv python3-pip

# Create virtual environment (recommended)
python3.10 -m venv neuralmind-env
source neuralmind-env/bin/activate

# Install NeuralMind
pip install neuralmind

macOS

# Using Homebrew
brew install python@3.11

# Create virtual environment
python3.11 -m venv neuralmind-env
source neuralmind-env/bin/activate

# Install NeuralMind
pip install neuralmind

Windows

# Ensure Python 3.10+ is installed from python.org
# Open PowerShell as Administrator

# Create virtual environment
python -m venv neuralmind-env
.\neuralmind-env\Scripts\Activate.ps1

# Install NeuralMind
pip install neuralmind

Docker

Use the repo’s Dockerfile — multi-stage, non-root, transitive deps pre-wheeled in the builder stage so the runtime image doesn’t need a C toolchain. See the Docker section above for the build and run commands, or the install-paths walkthrough for persistence and security notes.

If you want a minimal app-style Dockerfile for embedding NeuralMind inside another image:

FROM python:3.12-slim

WORKDIR /app

# Install NeuralMind (MCP server and tree-sitter graph backend are bundled)
RUN pip install --no-cache-dir neuralmind

# Your project files
COPY . .

CMD ["neuralmind-mcp"]

Verification

Check Installation

# Check CLI is available — works for every install path
neuralmind --help

# Check version — pip / uv / source paths only
# (pipx isolates the package in its own venv; Docker runs in-container)
python -c "import neuralmind; print(neuralmind.__version__)"

Verify Dependencies

# Check ChromaDB
python -c "import chromadb; print(f'ChromaDB version: {chromadb.__version__}')"

# Check graphify (if installed)
graphify --help

Test with Sample Project

# Create a test directory
mkdir test-neuralmind
cd test-neuralmind

# Create a simple Python file
echo 'def hello(): return "world"' > hello.py

# Build neural index (the code graph is generated automatically)
neuralmind build .

# Test query
neuralmind wakeup .

Troubleshooting

Common Issues

“Command not found: neuralmind”

Cause: Python scripts directory not in PATH.

Solution:

# Linux/macOS
export PATH="$HOME/.local/bin:$PATH"

# Then retry
neuralmind --help

“No module named ‘chromadb’”

Cause: Dependencies not installed properly.

Solution:

pip install --upgrade neuralmind
# or
pip install chromadb>=0.4.0

“graph.json not found”

Cause: The index was never built (since v0.15.0, neuralmind build generates the code graph itself via the built-in tree-sitter backend).

Solution:

# Build the neural index — generates the code graph automatically
neuralmind build /path/to/your/project

# Still failing? The doctor pinpoints the missing piece:
neuralmind doctor

Memory Error on Large Codebases

Cause: Insufficient RAM for embedding generation.

Solution:

Close other applications
Process in batches using --force flag to rebuild incrementally
Consider using a machine with more RAM

SSL Certificate Errors

Cause: Corporate proxy or certificate issues.

Solution:

pip install --trusted-host pypi.org --trusted-host pypi.python.org neuralmind

Getting Help

GitHub Issues: Report bugs
Discussions: Ask questions

Next Steps

After installation:

Build the neural index using neuralmind build (the code graph is generated automatically)
Query your codebase with natural language
Register the MCP server with your agents: neuralmind install-mcp --all
Set up MCP integration for Claude Desktop

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neuralmind

Installation Guide

Table of Contents

Install — pick your path

System Requirements

Minimum Requirements

Software Prerequisites

Quick Install

Installation Methods

From PyPI

Default Installation

With Development Tools

Full Installation

pipx

uv

Docker

From Source

Development Installation

Dependencies

Core Dependencies (Automatically Installed)

Optional Dependencies

Dev Extra (pip install neuralmind[dev])

Legacy [mcp] extra

External Tools

Platform-Specific Instructions

Linux (Ubuntu/Debian)

macOS

Windows

Docker

Verification

Check Installation

Verify Dependencies

Test with Sample Project

Troubleshooting

Common Issues

“Command not found: neuralmind”

“No module named ‘chromadb’”

“graph.json not found”

Memory Error on Large Codebases

SSL Certificate Errors

Getting Help

Next Steps

Dev Extra (`pip install neuralmind[dev]`)

Legacy `[mcp]` extra